Insertion junction: CLIP2.002552_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.002552
Chromosome:chromosome 7
Location:2782281
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g331475 (1 of 5) PTHR23091:SF255 - ACYL-COA N-ACYLTRANSFERASES-LIKE PROTEIN CDS
Cre07.g331500 CLPR3 (1 of 2) PTHR10381//PTHR10381:SF18 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED; inactive subunit of chloroplast ClpP complex outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACTCTGAGGGCCCAGCGTCCGGGCCAGCTGATGCTGCTGTTGGTGCTGG
Internal bar code:TTCAGTAATGTAGCCGAAGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2205
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGTGTAGATCAGGGCTCA
Suggested primer 2:GTCGTGTGTGTTTGGGAACG