Insertion junction: CLIP2.002588_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002588
Chromosome:chromosome 8
Location:143620
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g358538 (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCGCATGGGAGCTGGTGCGGCTGGTGCACACGCAGCTGCTCCTGCCC
Internal bar code:GGTATATGTGCGGAGGGATTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:467
LEAP-Seq percent confirming:95.8333
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:AAATGGGATGCAGGGAGGTG
Suggested primer 2:GGCCACACTCCATAGAGCTC