Insertion junction: CLIP2.002621_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002621
Chromosome:chromosome 7
Location:5820021
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g353500 CGLD5A ethylene response element DNA-binding domain containing protein; (1 of 1) PTHR31190:SF30 - ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGACCGTACAGCGTCACGGCGCCACTGCCAAATCCTGTTTGCCGCCACCC
Internal bar code:CCACCTTTGGCGACGAGTTTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2883
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:75

Suggested primers for confirmation by PCR

Suggested primer 1:CAAGTGCATGTGTGGGTGTG
Suggested primer 2:CGGGACAGTCGTCGTAGATG