Insertion junction: CLIP2.002801_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.002801
Chromosome:chromosome 6
Location:812033
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g255250 putative splicing factor 5'UTR
Cre06.g255300 CGLD28 Conserved in the Green Lineage and Diatoms; (1 of 1) IPR000104//IPR025461 - Antifreeze protein, type I // Protein of unknown function DUF4281 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGCTGCCATCCACCCACCCACCCACAGGAATCATAGCGTCCGGGGCGC
Internal bar code:TACGTGCGCTCATGGATCGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1987
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTTCTTCTTCGGACCCAC
Suggested primer 2:TCTTATGCTGCGTGTGGTGT