Insertion junction: CLIP2.002816_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.002816
Chromosome:chromosome 16
Location:5894185
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g679250 ELI1,ELIP2,ELI2,ELIP1 Early light-induced LHC-like protein; (1 of 6) PTHR14154//PTHR14154:SF5 - UPF0041 BRAIN PROTEIN 44-RELATED // EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGGAATGGGGACGCCAGGACGCGGCCTTGGGCCGGTTTGCTGAAGAGG
Internal bar code:TTGCTGCGTTGGGTGTCACCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:566
LEAP-Seq percent confirming:25.9259
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GGACAGCCACACGTACTCAA
Suggested primer 2:ATCCCCTCTCCACTCCCTTC