Insertion junction: CLIP2.002868_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002868
Chromosome:chromosome 17
Location:66966
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g696300 (1 of 1) PTHR12360//PTHR12360:SF1 - NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 // NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGTACGTGTGGCTTGAATGCGGGCTGGTAGAGTGTGGACCCACACGGG
Internal bar code:AGTGGAGGCAACATGCAAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3138
LEAP-Seq percent confirming:62.9032
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:62

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTTGACTCCCGTCGCATT
Suggested primer 2:AGTCGAGCTCAGTGTGTGTG