Insertion junction: CLIP2.002883_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002883
Chromosome:chromosome 3
Location:4210338
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g173600 (1 of 11) IPR000626//IPR029071 - Ubiquitin domain // Ubiquitin-related domain 3'UTR
Cre03.g173650 (1 of 274) IPR020683 - Ankyrin repeat-containing domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGCCCAACCACGGTCTATCCTTCGCGCCTTCTTCCACGCGCCTTCTT
Internal bar code:TCATACTTGTACATTCTCTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1271
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGGTCGGAGTCAGAAAA
Suggested primer 2:CTGTGCAGGAGAAAGTCGGT