Insertion junction: CLIP2.002902_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002902
Chromosome:chromosome 12
Location:8546223
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g549050 STR1 Strictosidine synthase; (1 of 1) 4.3.3.2 - Strictosidine synthase / Strictosidine synthetase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCCAAGCTGCAAGCTGGGCGAGTTGCATTTGAGGACTGTTGCTTGCAAA
Internal bar code:GGAGTTGGAAGCCACTGCCACA

Confirmation - LEAP-Seq

LEAP-Seq distance:1261
LEAP-Seq percent confirming:95.4545
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGACAGGGTCGAGTCTGG
Suggested primer 2:AACTACTCCAAGGCCAACCG