Insertion junction: CLIP2.002928_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.002928
Chromosome:chromosome 5
Location:149662
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g242400 PGR5 Proton-gradient related; (1 of 1) PTHR35709:SF1 - PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCCACGCGTTTGGTAGCCTGCCGCACCCGCTGAACTACGTGCCCGACC
Internal bar code:TCGATCGGCTTTGTGGACTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3741
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCTTGCAACCAACACATA
Suggested primer 2:CTGCCCTTGAAACACGTGTG