Insertion junction: CLIP2.003041_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003041
Chromosome:chromosome 1
Location:6911006
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g049600 CGLD22 (1 of 1) K02116 - ATP synthase protein I (atpI); Assembly factor for chloroplast ATPase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGAAGGAGTGGGGTCAGCAGCGAAGCGGAGCACGTTAGTACCGGGAGC
Internal bar code:GGCTTCAAAAGCTGGGATCCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1913
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:73
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:GTATCGGGCATGCATGGAGA
Suggested primer 2:TCACCGTATCCCTCGACACT