Insertion junction: CLIP2.003065_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003065
Chromosome:chromosome 9
Location:1049457
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g402051 CLV4 Voltage-gated chloride channel; (1 of 1) PTHR11689//PTHR11689:SF89 - CHLORIDE CHANNEL // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGGTTTTCAGGGCGCCAACGGACCATGACGCCTGTAGAGCCGTACCC
Internal bar code:AACTTGTGTGATTAGATGATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1228
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GGATGAGGTTGTGGAGGTGG
Suggested primer 2:CCAACCACGCTGTCTACCTT