Insertion junction: CLIP2.003066_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.003066
Chromosome:chromosome 17
Location:4251366
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g729700 CGL133 (1 of 1) PTHR14374:SF0 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 11; Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAACAACGCGAGCCACACAGCAGGAAACCCAGGGATCCAGGCTACCGCTG
Internal bar code:CCGATCGGGATGGATCGGGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:305
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTCTCCCCTCTCCCTCTC
Suggested primer 2:GTGTTTGCGTGTTGGAGGAC