Insertion junction: CLIP2.003088_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003088
Chromosome:chromosome 12
Location:4175259
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g517700 NYC1,SDR21 (1 of 2) K13606 - chlorophyll(ide) b reductase (NOL, NYC1); Chlorophyll b reductase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACCATCCGGACCATCATCCATGCCGCCTGTCACTCCGCCCGCTCAGG
Internal bar code:CTACGAGTTAGATGGTAGGAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:3160
LEAP-Seq percent confirming:98.5916
LEAP-Seq n confirming:70
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:AGCACACTCAGGTTGTAGGC
Suggested primer 2:CTGCTCTCCCAATTTGCTGC