Insertion junction: CLIP2.003166_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003166
Chromosome:chromosome 6
Location:8304616
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g307150 AMB1,AMYB1 Beta-amylase 1; (1 of 3) 3.2.1.2 - Beta-amylase / Saccharogen amylase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGGCCCGGGTCAATGGTTCGCGGCTTTTAATAACACTTTTCTGCGATT
Internal bar code:GAAATACGCGGTGGTGTTATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1318
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCGTCGTACTACCGGCATTA
Suggested primer 2:CTGAGTCGTCGTCTAGCGTC