Insertion junction: CLIP2.003169_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.003169
Chromosome:chromosome 6
Location:4753337
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g279500 CPL6 Conserved in the Plant Lineage; (1 of 1) PTHR15852:SF8 - CHAPERONE PROTEIN DNAJ-LIKE PROTEIN 3'UTR
Cre06.g279550 (1 of 62) PF00226 - DnaJ domain (DnaJ) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTACAGTGTCTTGCTCATGCTCAACGAGATGAGGGGTGTTACGCGGCGG
Internal bar code:TTACACGGATAAGTGTTCGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5328
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGGTGCGCCGTCTTTATT
Suggested primer 2:TAGCGCGTGGTTTGCTCTTA