Insertion junction: CLIP2.003175_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003175
Chromosome:chromosome 10
Location:4686640
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g452100 PSBY,PSBY2,PSBY1 (1 of 1) K02723 - photosystem II PsbY protein (psbY); ycf32-related polyprotein of photosystem II 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAAGCCACAGCCTGACAACTTGCGTATCATATGCTGCTGGCCTGTGAT
Internal bar code:ATGGAGATTTATGTGGTGCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2470
LEAP-Seq percent confirming:97.4359
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GACTTCGGGAGATGAGAGCG
Suggested primer 2:TCCATGCTGGGAATGGTGAC