Insertion junction: CLIP2.003183_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.003183
Chromosome:chromosome 8
Location:3704441
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g380250 CP12 (1 of 2) PF02672 - CP12 domain (CP12); Calvin cycle protein CP12, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATATCGCGGACCGCTCCCTTCGCTTGCACAACGTTGCGTCTTGTTTTTCT
Internal bar code:ATGAGACGAACGTTTTCGACTA

Confirmation - LEAP-Seq

LEAP-Seq distance:962
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GCAACACCCTTGAGTCGAGA
Suggested primer 2:CAGCTCACGGCATATAGGCA