Insertion junction: CLIP2.003212_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.003212
Chromosome:chromosome 12
Location:1954933
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g511400 CYCR3,PPR4 PentatricoPeptide Repeat protein 4; (1 of 1) PTHR10177//PTHR24015 - CYCLINE // FAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAAAGGCAACTTCAGTGAGCTGGTGATACAGAGTTCCTAACAACTGCC
Internal bar code:GAGGTTCTTGGTTGTGTTCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:3202
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:176
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:176

Suggested primers for confirmation by PCR

Suggested primer 1:AAGGGCGTTCCAGTGGTATG
Suggested primer 2:CACTTGATCTCCAGCAGCCA