Insertion junction: CLIP2.003226_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003226
Chromosome:chromosome 1
Location:4703564
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g032550 CGL127 (1 of 1) K11267 - sister chromatid cohesion protein PDS5 (PDS5); Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTTCATGGCGCCTGCACGCACCAGAGGCATACAAGCTGTTGCGTTGGG
Internal bar code:TTCACAACAAAGTGGATTTTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3622
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCATGGCGTGGTAATGAC
Suggested primer 2:TTACACGTACAGCACCACCC