Insertion junction: CLIP2.003241_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003241
Chromosome:chromosome 16
Location:2996675
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663800 TPT25,CGL51 Conserved in the Green Lineage; (1 of 1) PTHR11132:SF88 - XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTATGGTACTCACTCGTGCCCTCAAGTCTGACAACCTAGCAGAAGATG
Internal bar code:TAAAGTTTTCCGTCTTGTATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:985
LEAP-Seq percent confirming:45.2381
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:23
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCCGGCTTGAACTGGATC
Suggested primer 2:ACTGCACGAGGTAGCCTAGA