Insertion junction: CLIP2.003241_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003241
Chromosome:chromosome 16
Location:2996676
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g663800 TPT25,CGL51 Conserved in the Green Lineage; (1 of 1) PTHR11132:SF88 - XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTGTCGGCGCAGCAACGAAATGCACGGTCAAGGTTGGGCTCGCACCGT
Internal bar code:TAAAGTTTTCCGTCTTGTATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:4446
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:79
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:79

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGCACGAGGTAGCCTAGA
Suggested primer 2:TGTCCGGCTTGAACTGGATC