Insertion junction: CLIP2.003292_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003292
Chromosome:chromosome 5
Location:149825
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g242400 PGR5 Proton-gradient related; (1 of 1) PTHR35709:SF1 - PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAATCTGGATTGTTACATCATGCACCTTCTTGCGTCCTCCTCCATACCT
Internal bar code:AACTGTGGTGAGCGATTTCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:3837
LEAP-Seq percent confirming:98.6842
LEAP-Seq n confirming:75
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:76

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCTTGCAACCAACACATA
Suggested primer 2:CTGCCCTTGAAACACGTGTG