Insertion junction: CLIP2.003333_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.003333
Chromosome:chromosome 6
Location:290422
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g250850 MSH1 DNA mismatch repair protein, MutS homolog; (1 of 1) PTHR11361:SF82 - DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCCCTCGGTCCCCTCCACCACCTGACCACCACCACCAGGCCGGACCGG
Internal bar code:CGCGCTTATAATTATTTTTGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1221
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:ACGACCTGGTCTACCTGCT
Suggested primer 2:GCTGCGTGCGTGTAGTAAAC