Insertion junction: CLIP2.003398_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003398
Chromosome:chromosome 17
Location:3241024
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721700 CPLD44 (1 of 3) PF13599 - Pentapeptide repeats (9 copies) (Pentapeptide_4); conserved expressed thylakoid lumenal protein-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATTCCTGTTCGGATACTAACCTGCCCCCCTCCTCTCAACCTCTCCCCT
Internal bar code:ATACTACCGTATCTTGGGCTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:3020
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:ATGACCTGCGTCTTGTCCAG
Suggested primer 2:GTGTGGTCTGTCCTGGTCTG