Insertion junction: CLIP2.003398_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.003398
Chromosome:chromosome 17
Location:3241025
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721700 CPLD44 (1 of 3) PF13599 - Pentapeptide repeats (9 copies) (Pentapeptide_4); conserved expressed thylakoid lumenal protein-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGCATGTGCGAGCGGCCACGGTCGGGCAAGGGCCGCGGGCTGTCCGAC
Internal bar code:AGTACCCGTCGCGCTCAGTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1971
LEAP-Seq percent confirming:5.26316
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:36
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGGTCTGTCCTGGTCTG
Suggested primer 2:ATGACCTGCGTCTTGTCCAG