Insertion junction: CLIP2.003404_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003404
Chromosome:chromosome 15
Location:516501
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g636050 CPLD31 Conserved in the Plant Lineage and Diatoms; (1 of 2) PTHR35514//PTHR35514:SF1 - FAMILY NOT NAMED // THYLAKOID LUMENAL 15.0 KDA PROTEIN 2, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCTTACCAAAGCCCCCAACCTCGACGCCCCCATCCAAGCTGCCCCACA
Internal bar code:TACATATAATTAAAGGCAACTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2298
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCTCGACATGTCAACACA
Suggested primer 2:CCATTGGCGGATTGATGCAG