Insertion junction: CLIP2.003425_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.003425
Chromosome:chromosome 6
Location:2643734
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g270300 (1 of 1) PTHR13271//PTHR13271:SF36 - UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE // SUBFAMILY NOT NAMED 3'UTR
Cre06.g800644 gene_edge/mRNA_edge/5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGACGAAAGGCACTCTCGGGGCCAACCACCTTTCCGTACCTCATGCCGC
Internal bar code:GTCTGTTATCAGCGTGACCCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:4619
LEAP-Seq percent confirming:94.382
LEAP-Seq n confirming:84
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:89

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTTGAGTCAGACCTGCAG
Suggested primer 2:GTGACACGAGGAAGTCAGCA