Insertion junction: CLIP2.003446_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003446
Chromosome:chromosome 11
Location:320734
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467569 ATPD,ATPD1 Chloroplast ATP synthase delta chain; (1 of 1) K02113 - F-type H+-transporting ATPase subunit delta (ATPF1D, atpH) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTACGACTGCGGGGCAGGGTAACGGGTAACCGGGAAGGAGAAGGTCAGCC
Internal bar code:CCGACGAGCGCCCCTGGCCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1819
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GAATCACCGTCGCGATTGTG
Suggested primer 2:TTCCCCCATAAGCTTGCTGG