Insertion junction: CLIP2.003488_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003488
Chromosome:chromosome 17
Location:3765919
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g726650 CGL96 (1 of 1) K14839 - nucleolar protein 16 (NOP16); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCACTTGATTGGCCTACGTCACGTCTTACTCACACCTGCACGTGTGCA
Internal bar code:GGACAGATCTGGGCGTTGTAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1606
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CGGCTATCAACCGCAAATGG
Suggested primer 2:CGCCAATTTGCTACCTACGC