Insertion junction: CLIP2.003500_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003500
Chromosome:chromosome 9
Location:5636527
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g410050 putative Cation-transporting ATPase; (1 of 2) PF00122//PF00689//PF00690//PF13246 - E1-E2 ATPase (E1-E2_ATPase) // Cation transporting ATPase, C-terminus (Cation_ATPase_C) // Cation transporter/ATPase, N-terminus (Cation_ATPase_N) // Cation transport ATPase (P-type) (Cation_ATPase) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAAGGTGGGCCGTGACAGGAAGCGAGCCGCAACGGGCCGCATGCCCTA
Internal bar code:TAAACTTACTAGGTACTTCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:108
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GCAGAACCTTGGACCATGGA
Suggested primer 2:GAGCGGAGATAAGGTGAGGC