Insertion junction: CLIP2.003536_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003536
Chromosome:chromosome 7
Location:828561
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g318350 CGL64 (1 of 4) PF12576 - Protein of unknown function (DUF3754) (DUF3754); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCTTTACGGTAACAACATCATTGCCTCCCCTCCTCCTACACCCCCATCC
Internal bar code:GGAAGAAAGGCCACTCGCATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:668
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCAACCTTACGAGCAGCA
Suggested primer 2:CAGAAGTTGCAGCGTGCTTT