Insertion junction: CLIP2.003574_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003574
Chromosome:chromosome 16
Location:1789983
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g655150 (1 of 2) PTHR14136:SF11 - THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGCTTAGTTACTCTGTCACAGTGTCGCATTACAGTTAGGTACTACGAT
Internal bar code:TCGTCGAAGCAGTTTGTACGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1528
LEAP-Seq percent confirming:90.6977
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGTATTACGGTAGTGGGC
Suggested primer 2:AGGCTATTGTGAGTGGTGGC