Insertion junction: CLIP2.003589_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003589
Chromosome:chromosome 1
Location:314760
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g001750 TIG1 chloroplast trigger factor; (1 of 1) PTHR30560 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCAACTAGGCAAGCACCGGGCACTACACAACGGGGCGCAGGCACCCAG
Internal bar code:TCTCAATAGTTTCGGACCCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3149
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:ACTTATACTCGGCCCCAGGT
Suggested primer 2:CACACCCACACTCACCCTAC