Insertion junction: CLIP2.003624_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.003624
Chromosome:chromosome 3
Location:1319076
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g150350 CPLD70 Conserved in the Plant Lineage and Diatoms; (1 of 5) K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGGCGCACCGACGGCGCCTCTGCCCTCCACCGGTCCGGCCCCCACCCCG
Internal bar code:TCTTAACATCGTTGCGCTCTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:755
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CGTAGTCGGCTAGCCTCAAG
Suggested primer 2:GTGTTGCTGGTGTTGCTGAG