Insertion junction: CLIP2.003632_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003632
Chromosome:chromosome 3
Location:4195134
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g173450 PAO4 Pheophorbide a oxygenase-related protein; (1 of 8) 1.14.12.20 - Pheophorbide a oxygenase / Pheide a oxygenase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGACGGCCGCTGCACGCGTGTGCCGCAGGTGGGGGCGCCGCGGTAGCC
Internal bar code:ATCCATGTGGATCTCGCGTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:259
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:TACGGGAAGAGGGAAGGGAG
Suggested primer 2:CCAGCACCCACATCCTCAAT