Insertion junction: CLIP2.003634_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003634
Chromosome:chromosome 14
Location:2495845
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g624350 VTE6 Tocopherol O-methyltransferase; (1 of 1) K18534 - MPBQ/MSBQ methyltransferase (K18534) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGAGTGGTCGGCAGAACGGGGCCGGTGGCAGCAGGGCAAGCCGCACAC
Internal bar code:GTGATTGTTACTCTTTTGATCT

Confirmation - LEAP-Seq

LEAP-Seq distance:2221
LEAP-Seq percent confirming:51.4286
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:GGAACTCCGGGGCGTTATAG
Suggested primer 2:TCACCGGACCCACCTCTAAT