Insertion junction: CLIP2.003655_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003655
Chromosome:chromosome 12
Location:6275948
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g536500 CGL10 Conserved in the Green Lineage 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCATCAAAGCCACAAGCGCGCGCAGGCTGCCCAGTGGTGCGCGGGTGCCT
Internal bar code:TGATGATTTCAAGAGGGCACTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2146
LEAP-Seq percent confirming:89.1892
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:CAATGGGGTGGTGCTGTTTG
Suggested primer 2:GAACGCGATGTTGCTGCTAG