Insertion junction: CLIP2.003671_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.003671
Chromosome:chromosome 12
Location:7655669
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g555400 CGLD32 Conserved in the Green Lineage and Diatoms; (1 of 1) PF10693 - Protein of unknown function (DUF2499) (DUF2499) outside_mRNA
Cre12.g555450 PMK,IPK,IMPK (1 of 1) 2.7.1.140 - Inositol-tetrakisphosphate 5-kinase / 1D-myo-inositol-tetrakisphosphate 5-kinase; inositol-tetrakisphosphate 5-kinase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCATTTAAGACGCTTATGTTGCCAGCATGCGCTGTGCCACTGTACTCTT
Internal bar code:ACTACTGGGGAAATATTAGAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1722
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAACTCCCTGGACAATCC
Suggested primer 2:GCTTGTCCGGTACACAGTGA