Insertion junction: CLIP2.003725_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003725
Chromosome:chromosome 17
Location:3281852
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g722000 MFT30,SOC1 Major facilitator superfamily transporter; (1 of 1) K08214 - MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 18 (SLC22A18) 5'UTR
Cre17.g722050 (1 of 1) K19202 - histone deacetylase complex subunit SAP30 (SAP30) outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCTGCCTACGGCCCCTTGCTAGTACAACTGAGTGAAGAAGGACTGTA
Internal bar code:TGTCTGCCAGAATTGATGCGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2523
LEAP-Seq percent confirming:97.7273
LEAP-Seq n confirming:86
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:88

Suggested primers for confirmation by PCR

Suggested primer 1:CCGATGAACTGGATAGCGCT
Suggested primer 2:GTCCAGCTTCCCGAAGTTCA