Insertion junction: CLIP2.003808_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.003808
Chromosome:chromosome 3
Location:5542897
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g185150 (1 of 11) IPR023109 - Integrase/recombinase, N-terminal 3'UTR
Cre03.g185200 CPL3,MPA6 (1 of 3) PTHR11668//PTHR11668:SF267 - SERINE/THREONINE PROTEIN PHOSPHATASE // SUBFAMILY NOT NAMED; protein ser/thr phosphatase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATAGCTCCAATGCTCAAGTACACAGCTTGATGCCTCGGTTTTCTACTAG
Internal bar code:AAATACTCAATACGTCGACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1357
LEAP-Seq percent confirming:77.4194
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCTGTTTCCTAGGACTGT
Suggested primer 2:TGCATGTTGTTTGGTGCTCG