Insertion junction: CLIP2.003809_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.003809
Chromosome:chromosome 5
Location:3533090
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g233650 FXL9 (1 of 2) IPR000014//IPR011990 - PAS domain // Tetratricopeptide-like helical domain; FixL-like PAS domain protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGGGGGGGCGTGGGAGGGCCAAGAAGGGCGCGCTGATGTACGCACCCT
Internal bar code:GTGAGCCTCACAGATCTTCTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1862
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGTGGCGATACGGTTATG
Suggested primer 2:GCTGGCTTTATCGTGCTTCG