Insertion junction: CLIP2.003816_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.003816
Chromosome:chromosome 1
Location:6911022
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g049600 CGLD22 (1 of 1) K02116 - ATP synthase protein I (atpI); Assembly factor for chloroplast ATPase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCCACTCCTTCCCTTCCACCTCGAATTGGCCCTGCAGCGCGGGTGAGA
Internal bar code:GCCCTCCGGTCATTATTAACGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3389
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GGATGATGGGGATGAGCAGG
Suggested primer 2:GTATCGGGCATGCATGGAGA