Insertion junction: CLIP2.003853_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.003853
Chromosome:chromosome 12
Location:1654232
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g486600 MEX1 (1 of 1) PTHR34809//PTHR34809:SF1 - FAMILY NOT NAMED // MALTOSE EXCESS PROTEIN 1, CHLOROPLASTIC-RELATED; Maltose exporter-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCGCGCCCTACCCGCCGACGCAATCCGCAGACCGCATGTGCCGTTCA
Internal bar code:AACTAGCTAGGTGCGCATTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:4396
LEAP-Seq percent confirming:97.8261
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTTCAGCATGTTCCGCAG
Suggested primer 2:CCTAGTGCTGCCGACTGTAG