Insertion junction: CLIP2.003902_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.003902
Chromosome:chromosome 16
Location:1310148
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g651550 MTT1 Mitochondrial transcription termination factor; (1 of 10) PF02536 - mTERF (mTERF) 3'UTR
Cre16.g651600 (1 of 274) IPR020683 - Ankyrin repeat-containing domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCTGGCCGACCCTGGCCGACGCCCCCAAGCGCCTGAAGTATTGCAAGC
Internal bar code:TATCTGAGATGTGTTCACATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:6587
LEAP-Seq percent confirming:96.7742
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:62

Suggested primers for confirmation by PCR

Suggested primer 1:ACATTCATGTCAGGCCAGGG
Suggested primer 2:TCAAGTCAGGCTGCTAACGG