Insertion junction: CLIP2.003948_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.003948
Chromosome:chromosome 13
Location:2435633
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre13.g579550 CGL27 Conserved in the Green Lineage; (1 of 5) IPR002645 - STAS domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGTGGCCGAGCCAATAGGGGTGTGTGTGGGCGGGGAGGGGCGAGGGGG
Internal bar code:GATTGGAGCATCCCGCCCTTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:77
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CGAGTCCAGCTGCTTGAAGA
Suggested primer 2:CGTCCCCGAGTGTTGTTGTA