Insertion junction: CLIP2.004008_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004008
Chromosome:chromosome 7
Location:2781441
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g331475 (1 of 5) PTHR23091:SF255 - ACYL-COA N-ACYLTRANSFERASES-LIKE PROTEIN intron
Cre07.g331500 CLPR3 (1 of 2) PTHR10381//PTHR10381:SF18 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT // SUBFAMILY NOT NAMED; inactive subunit of chloroplast ClpP complex outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGCCTGAGCTCTGGGGCGCGTCAAGGTCAGGCACACAGACTACCGCAC
Internal bar code:AATATGAACTTAAGAAGGAAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:350
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTGGTTGCGTTAGGACTG
Suggested primer 2:CGTTCCCAAACACACACGAC