Insertion junction: CLIP2.004027_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.004027
Chromosome:chromosome 8
Location:3534639
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g379200 CPLD18 Conserved in the Plant Lineage and Diatoms; (1 of 1) PTHR33471//PTHR33471:SF5 - FAMILY NOT NAMED // EXPRESSED PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGATTTGCGGATAGCGCTGCCAGTCCGTATCTCCGTGACTGGTTCCTCCG
Internal bar code:ATGCACGTAATACGGGTCGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1348
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGCGCCAAAACGAACTTTCC
Suggested primer 2:GCTTTAAGGCCGCATGTACG