Insertion junction: CLIP2.004027_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004027
Chromosome:chromosome 8
Location:3534647
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g379200 CPLD18 Conserved in the Plant Lineage and Diatoms; (1 of 1) PTHR33471//PTHR33471:SF5 - FAMILY NOT NAMED // EXPRESSED PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAAATCATGACAGTACGCGCCAACCCTGGCGGCTGCACAGGGTGTGTGG
Internal bar code:ATGCACGTAATACGGGTCGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:4871
LEAP-Seq percent confirming:96.0
LEAP-Seq n confirming:48
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:GCTTTAAGGCCGCATGTACG
Suggested primer 2:AGCGCCAAAACGAACTTTCC