Insertion junction: CLIP2.004043_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.004043
Chromosome:chromosome 7
Location:4694036
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g345050 (1 of 19) PTHR31251//PTHR31251:SF1 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGACATTGAAACTAGTCTGTGGCAACCAAGAGCCCAGCAATGGTGCAG
Internal bar code:TATACAGGCCCGTATGGCGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1378
LEAP-Seq percent confirming:94.5946
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:TGTGGTTGAGCGCAAATGTG
Suggested primer 2:GCGGCTGTTTCATGTGTGTT