Insertion junction: CLIP2.004072_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.004072
Chromosome:chromosome 4
Location:3933117
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g231026 SRP43,cpSRP43 (1 of 1) K12271 - signal recognition particle 43 kDa protein (SRP43, CAO); 43 kDa subunit of chloroplast signal recognition particle intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTTTGGGCAATCGAGCCCACGCCGTGTTCTGCTGATACCCATACAGTCC
Internal bar code:GAGAGTTTTGGATCGACATAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:131
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:40
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:TACCTACCTACCTGCCCACC
Suggested primer 2:CGTTTCTCTCGTGTTCCCCA